Please use this identifier to cite or link to this item: http://hdl.handle.net/10603/472895
Title: Cytoskeletal filament and intracel lular cargo dynamics facilitated by motor proteins role of activity and a catch bonded dynein
Researcher: Gupta, Nisha
Guide(s): Chaudhuri, Abhishek
Keywords: Physical Sciences
Physics
Physics Particles and Fields
University: Indian Institute of Science Education and Research (IISER) Mohali
Completed Date: 2019
Abstract: The cytoskeleton of the cell is a highly complex, dynamic and adaptive system newlineof semiand#64258;exible and#64257;laments with their associated motor proteins and cross-linkers. It newlinegenerates internal stresses and responds to external ones, intermediates cell signal- newlineing, ensures the structural integrity and morphology of the cell and helps in the newlinespatial organization of cellular contents. This dynamic regulation is eand#64256;ected by the newlinecoordination of the diand#64256;erent cytoskeletal components : polymeric and#64257;laments such as newlinemicrotubules, actin and intermediate and#64257;laments; cross-linker proteins such as fascin newlineand and#945;-actinin; and motor proteins such as dynein, kinesin and myosin. newlineMuch of the physical understanding of the components of cytoskeletal network newlinehave been obtained through in-vitro experiments on cytoskeletal extracts. In a bead newlineassay a cytoskeletal and#64257;lament is irreversibly attached to a substrate, while the motor newlineproteins moving on the and#64257;lament are attached to a bead which is optically trapped. newlineOn the other hand, in a gliding assay setup, the geometry is inverted. Here, the newlinecargo domains of motor proteins are irreversibly adsorbed on a glass substrate, while newlinetheir and#64257;lament binding domains attach to the complimentary cytoskeletal and#64257;lament. In newlinethe presence of ATP, the motors move in a directed fashion along the length of the newlineand#64257;lament before detachment. This results in a gliding movement of the cytoskeletal newlineand#64257;lament in the opposite direction. Apart from a wealth of information on single motor newlineprotein movement and force generation, motility assays have revealed the emergence newlineof collective motion in high densities of such and#64257;laments leading to the formation of newlineclusters, swirls and interconnected bands. Within these in-vitro settings, it is possible newlineto ask theoretical questions regarding both the role of individual motor proteins and newlinetheir cooperative dynamics, in controlling the dynamics of the cargo/and#64257;lament that newlinethey bind/unbind to/from and therefore make falsiand#64257;able predictions amenable to newlineexperimental veriand#64257;cations.
Pagination: 90p.
URI: http://hdl.handle.net/10603/472895
Appears in Departments:Department of Physical Sciences

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01_title.pdfAttached File340.07 kBAdobe PDFView/Open
02_preliminary pages.pdf417.7 kBAdobe PDFView/Open
03_contents.pdf60.17 kBAdobe PDFView/Open
04_abstract.pdf60.77 kBAdobe PDFView/Open
05_chapter 1.pdf562.96 kBAdobe PDFView/Open
06_chapter 2.pdf729.94 kBAdobe PDFView/Open
07_chapter 3.pdf1.64 MBAdobe PDFView/Open
08_chapter 4.pdf722.92 kBAdobe PDFView/Open
09_chapter 5.pdf585.93 kBAdobe PDFView/Open
10_chapter 6.pdf93.48 kBAdobe PDFView/Open
11_annexures.pdf116.34 kBAdobe PDFView/Open
80_recommendation.pdf395.03 kBAdobe PDFView/Open
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