Please use this identifier to cite or link to this item: http://hdl.handle.net/10603/204573
Title: Quality Impact Studies of Variability on Genome Sequence of Tomato
Researcher: Kumari Uma
Guide(s): VARSHA RANI - ASHOK KUMAR CHOUDHARY
University: Jharkhnad Rai University
Completed Date: 10/04/2018
Abstract: ABSTRACT newlineAnnotation of the genome sequence represents a large range of intra-specific variability by newlinebiological raw data stored in public databank such as genbank or EMBL for primary newlineprotein or DNA sequence. The data can be submitted and accessed via the worldwide web. newlineThe tomato genome sequence helps to identify beneficial genes. Tomato genome newlineresources database is an online and interactive relational database developed using open newlinesource software. Tomato genome sequence has created a huge impact on solanaceae newlineresearch, tomato fruits are rich sources of carotenoid pigments. These pigments with betaring newlineas known as pro-vitamin A. National Center of Biotechnology Information (NCBI) newlinethus provide a common data extraction platform using sequence analysis. NEB cutter tools newlinewill take a DNA sequence and find the large, non overlapping open reading frame using newlineAT and GC ratio. Global alignments are usually done for comparing two genes like newlinecomparing two genes with same function. When expect value is increases from the default newlineof value 10, a larger list with more scoring hits can be reported. NCBI has a tool for newlinealigning two sequences provide by the user. The tools are called BLAST 2 sequences. newlineBLAST is programs compares nucleotide or proteins sequences and calculate the newlinestatistical significance of matches. . Promoters are interest as a tool to regulate genetically newlinemodified organism product and as markers for natural variation. Tomato is a model for a newlinenumber of biological studies important to agriculture such as fruit development and newlineripening, disease resistance and biochemical pathway of important nutrients. Tomato now newlinejoins other crop plants with genome sequence available for plant researcher. The data newlineavailable for biological system are diverse in nature and include various types such as newlinesequences, structures expression data interaction, pathway, system data and low newline3 newlinecomplexity. The Coding Sequence (CDS) is the actual region of DNA that is translated to newlineform proteins. While the ORF may contain introns as well and the
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URI: http://hdl.handle.net/10603/204573
Appears in Departments:Faculty of Science and Engineering

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01_title page.pdfAttached File20.16 kBAdobe PDFView/Open
02_certificate.pdf403.1 kBAdobe PDFView/Open
03_abstract.pdf222.81 kBAdobe PDFView/Open
04_acknowledgement.pdf84.83 kBAdobe PDFView/Open
05_contents.pdf169.63 kBAdobe PDFView/Open
06_abbreviations.pdf88.05 kBAdobe PDFView/Open
07_chapter 1.pdf220.17 kBAdobe PDFView/Open
08_chapter 2.pdf102.81 kBAdobe PDFView/Open
09_chapter 3.pdf2.15 MBAdobe PDFView/Open
10_chapter 4.pdf485.74 kBAdobe PDFView/Open
13_references.pdf233.7 kBAdobe PDFView/Open


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